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=== Putaran Regional ===
{{Main|Babak Regional Liga 3 2020}}
=== Putaran Pra-nasional ===
{{Main|Babak Pra-nasional Liga 3 2020}}
16 tim berikut memasuki babak pra-nasional:<ref>{{cite web |title=Hasil Laga Babak 16 Besar Liga 3 |url=https://www.pssi.org/news/hasil-laga-babak-16-besar-liga-3 |website=PSSI - Football Association of Indonesia |accessdate=27 December 2019 |language=id-ID}}</ref>
{{Columns
| gapbetween = 3.25em
| col1 =
* [[757 Kepri Jaya F.C.|757 Kepri Jaya]]
* [[Bandung United FC|Bandung United]]
* [[Karo United FC|Karo United]]
* [[Madura F.C.|Madura]]
| col2 =
* [[Persatu Tuban|Persatu]]
* [[Perseden Denpasar|Perseden]]
* [[Persedikab Kediri|Persedikab]]
* [[Persemi Mimika|Persemi]]
| col3 =
* [[Perseta Tulungagung|Perseta]]
* [[Persibat Batang|Persibat]]
* [[Persidi Idi|Persidi]]
* [[Persinga Ngawi|Persinga]]
| col4 =
* [[PSGC Ciamis|PSGC]]
* [[PSIL Lumajang|PSIL]]
* [[PS Mojokerto Putra|PSMP]]
* [[Sleman United F.C.|Sleman United]]
}}
== Babak Nasional ==
Total 32 Tim akan berkompetisi di babak ini
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