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* Nabi Palsu, Membuka Kembali Pintu Kenabian. Yogyakarta/Indonesia: Ar-Ruzz, 2003.
* Anti-Kesempurnaan, Membaca, Melihat dan Bertutur tentang Islam. Yogyakarta: Pustaka Pelajar, 2002.
== Tulisan Artikel di Jurnal Ilmiah ==
* “Nada Polifonik Teks Marxist Ala Kuntowijoyo: Pencarian Jati Diri Dari Marxisme Ke Islam.” Jurnal Sosiologi Reflektif 13, no. 2 (June 19, 2019): 189–208, tahun 2019. https://doi.org/10.14421/jsr.v13i12.1613.
* “Returning to the Religion of Abraham: Controversies over the Gafatar Movement in Contemporary Indonesia” Islam and Christian–Muslim Relations, vol. 30, no. 1: pp. 87-104, tahun 2019.
* “Not a religious state: A study of three Indonesian religious leaders on the relation of state and religion” Indonesia and the Malay World, vol. 46, no. 135, Routledge London, 2017: pp. 95-116, DOI: 10.1080/13639811.2017.1380279.
* “Tuhan Di Antara Desakan Dan Kerumunan: Komodifikasi Spiritualitas Makkah Di Era Kapitalisasi, Episteme, vol. 12. No. 1, tahun 2017, pp. 1-28.
* “Homogenizing Indonesian Islam: Study of the narratives of the persecution of the Rausyan Fikr Shia group in Yogyakarta” Studia Islamika, vol. 24 no. 1, tahun 2017, pp. 1-32.
* “Revisiting the Spirit of Religious Nationalism in the Era Of Pluralism and Globalization: Reading the Text of NDP Of HMI” Walisongo: Jurnal Penelitian Sosial Keagamaan, Vol. 24 No. 2, tahun 2016, pp. 285-310
* “Antara Ziarah Religius dan Kapitalisasi di Era Globalisasi: Catatan Etnografis Umrah” Afkaruna vol. 12 no. 1, tahun 2016, pp. 114-134.
* “Identitas Keacehan dalam isu-isu Syariatisasi, Kristenisasi, Aliran Sesat dan Hegemoni Barat” Islamica, Jurnal Studi Keislaman, vol. 11, no. 1, tahun 2016, pp. 1-22.
* “Tanggalkan Khalifah Di Bumi Ini: Membaca Narasi Sukarno tentang Sekularisme Turki" Al-Tahrir, Jurnal Pemikiran Islam vol. 16 no. 2, tahun 2016, pp. 313-338.
* “Unearthing Nusantara’s concept of religious pluralism: Harmonization and syncretism in Hindu-Buddhist and Islamic classical texts“Al-Jamiah: Journal of Islamic Studies, vol. 54, no. 1, tahun 2016, pp. 1-30.
* “Fears of an Open Market: Citizens‘ Voices of Asian Economic Community (AEC) Addin, vol. 10, no. 2, tahun 2016, pp. 55-78.
* “ Islamic Acehnese Identity, Sharia, and Christianization Rumor: A Study of the Narratives of the Attack on the Bethel Church in Penauyong Banda Aceh“ International Journal of Indonesian Islam, vol. 10, no. 1, tahun 2016, pp: 1-35.
* “Are there any Indonesian prophets? Dealing with a common question and possible answer, Ulumuna, vol. 20, no. 1, tahun 2016, pp. 1-29.
* “Revisiting Indonesian public reactions against Danish cartoons depicting prophet Muhammad” Indonesian Journal of Islam and Muslim Societies, vol. 5, no. 2, tahun 2015, pp: 195-229.
* “From Musaylima to Kharijite Najdiyya” Al Jamiah, vol. 51, no. 2, 2013.
* “Pluralism in education, a study of Mukti Ali’s thought” in eds. Rommel A. Curaming, Frank Dhont, Education in Indonesia perspectives, politics and practices. Yogyakarta: Yale Indonesia Forum, International Conference Book Series 4, Faculty of Social Sciences, Yogyakarta State University, tahun 2012.
* “Pluralism versus Islamic Orthodoxy, The Indonesian public debate over the case of Lia Aminuddin, the founder of Salamullah religious cult” in ed. Thomas J. Connors, Social justice and rule of law: addressing the growth of a pluralist Indonesian democracy. Tembalang, Semarang, Central Java, Indonesia; [New Haven]: Faculty of Social and Political Sciences, Diponegoro University ; Yale Indonesia Forum, tahun 2011.
* “Rethinking other claimants to prophethood, the case of Umayya b. Abi Salt,” Al-Jamiah, Journal for Islamic Studies, vol. 48 no. 1, tahun 2010, pp. : 169-190
* “Pope Benedict XVI and Islam: Indonesian Reactions to the Regensburg Address” Journal of Islam and Christian-Muslim Relation/ICMR [Francis and Taylor, Routledge, London], vol. 20, no. 4, October: tahun 2009, pp. 409–421.
* “A Defender of an ‘Existence’: Mulla Sadra’s [philosophical principles] on Mumkin [Potentiality]” al-Jami’ah, vol. 41 no. 1: tahun 2003, pp. 42-67.
* “Demythologizing the Narratives of the Qur’an: Muhammad ‘Abduh’s and Bint Shati’s Accounts on ‘Ad, Thamud and Pharaoh in interpreting Q. 89: 1-10. al-Jami’ah vol. 40, no. 1 (January-June): tahun 2002, pp. 80-97.
* “Al-Tha’labi’s Account of Fir’awn: From the Birth of Musa to his Contest against Fir’awn’s Magicians” Retorika vol. 1, (September-December): tahun 2001, pp. 102-114.
* “The Influence of Zahiri Theory on Ibn Hazm’s Theology: The Case of His Interpretation of the Anthropomorphic Text ‘the Hand of God’.” Medieval Encounter [Brill Academic Publisher, Leiden], vol. 5 no. 1 (March): tahun 1999, pp.112-120.
== Referensi ==
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